Download MendeleyKinase Scaffold Repurposing in the Public Domain
Sorrell, F.J., Henderson, S.H., Elkins, J.M., Ward, S.To be published.
6S1B
Crystal Structure of DYRK1A with small molecule inhibitor
- PDB DOI: https://doi.org/10.2210/pdb6S1B/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-06-18 Released: 2019-06-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.179
- R-Value Work: 0.161
- R-Value Observed: 0.162
Starting Model: experimental
View more details
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dual specificity tyrosine-phosphorylation-regulated kinase 1A | 361 | Homo sapiens | Mutation(s): 0 Gene Names: DYRK1A, DYRK, MNB, MNBH EC: 2.7.12.1 (PDB Primary Data), 2.7.11.23 (UniProt) |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13627 (Homo sapiens) Explore Q13627 Go to UniProtKB: Q13627 | |||||
PHAROS: Q13627 GTEx: ENSG00000157540 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q13627 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| KRQ (Subject of Investigation/LOI) Query on KRQ | H [auth A] | ~{N}-methyl-4-pyrazolo[1,5-b]pyridazin-3-yl-pyrimidin-2-amine C11 H10 N6 AXNJRTBQYGIJON-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | I [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| PTR Query on PTR | A | L-PEPTIDE LINKING | C9 H12 N O6 P |  | TYR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.179
- R-Value Work: 0.161
- R-Value Observed: 0.162
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 101.31 | α = 90 |
| b = 70.41 | β = 118.04 |
| c = 68.7 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2019-06-26 Deposition Author(s): Sorrell, F.J., Henderson, S.H., Redondo, C., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Elkins, J.M.
Revision History (Full details and data files)
- Version 1.0: 2019-06-26
Type: Initial release - Version 1.1: 2019-08-21
Changes: Data collection - Version 1.2: 2024-01-24
Changes: Data collection, Database references, Refinement description - Version 1.3: 2024-10-16
Changes: Structure summary
